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Plant Anatomy & Taxonomy

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Plant Anatomy
Taxonomy and Plant Classification
Systematics, Taxonomy and Cladistics















Home / Plant Anatomy & Taxonomy / Taxonomy and Plant Classification


Categories
Plant Anatomy
Systematics, Taxonomy and Cladistics
! Teaching Documents about Classification and Phylogeny@
Teaching Documents about Cladistics@
Botanical Nomenclature Databases@
Taxonomy and Plant Classification Databases@
Teaching Documents about Botany@
Glossaries, Dictionaries and Encyclopedias: Palaeontology@
Glossaries, Dictionaries and Encyclopedias: Botany@
Glossaries, Dictionaries and Encyclopedias: Biology@
Databases of Technical Terms@
! Introductions to both Fossil and Recent Plant Taxa@
Trees@
Plant Photographs@
Websites, showing Plant Fossils@


Taxonomy and Plant Classification


John Alroy, National Center for Ecological Analysis and Synthesis, University of California, Santa Barbara: How many named species are valid? PNAS, vol. 99: 3706-3711, 2002.

The American Society of Plant Taxonomists (ASPT). The American Society of Plant Taxonomists promotes research and teaching in the taxonomy, systematics, and phylogeny of vascular and nonvascular plants.

John R. Anderson, Georgia Perimeter College Geology: The World of Geology, Prefix/Suffix Meanings.

B & T World Seeds, France: Common Names Look-up. This is a browsable name list of about 25,000 common plant names and its scientific equivalent.

! Peter Bengtson (1988): Open Nomenclature. Palaeontology, Volume 31, Part 1, 1988, Pages 223-227. Accessible through the www.palass.org website.

The Museum of Paleontology (UCMP), University of California at Berkeley: Web Lift to Taxa. This NEW version of the UCMP Web Lift to Taxa breaks the long table of the old version into several shorter lists. See also The UCMP Express Web Lift.

! Biodiversity Heritage Library. Ten major natural history museum libraries, botanical libraries, and research institutions have joined to form the Biodiversity Heritage Library Project. The group is developing a strategy and operational plan to digitize the published literature of biodiversity held in their respective collections. For the first time in history, the core of our natural history and herbaria library collections will be available to a truly global audience. Browse by titles, authors, subjects, names, map, or year.
Go to: Plants. Currently mor then 1500 titles tagged with "Plants". Superbly done!
Comment: Using "View text" is much quicker (for a first glance) then "View image".

Biology Encyclopedia (by Advameg, Inc.): History of Taxonomy.

Peter D. Bostock, Queensland Herbarium, Department of Environment, Queensland, Australia: TRANSLAT. Pagina domestica linguae Latinae botanices, computer translation of botanical latin. TRANSLAT, a downloadable free-ware program, uses indexed on-disk databases of verbs, adjectives, nouns, pronouns, phrases and adverbs, (including conjunctions and prepositions), to match stems and terminations (flexions or endings), or the whole word, if indeclinable, of botanical Latin words to provide both a literal/figurative English meaning, and an optional associated statement of the grammar. Also accessable via http://www.geocities.com/Athens/Oracle/2821/index.html

Gerald (Gerry) Carr, Botany Department, University of Hawaii at Manoa, Honolulu: Vascular Plant Family Access Page. This is a collection of descriptions and captioned images of flowering plant families (magnolias, lilies, etc.) and non-flowering plant families (cycads, conifers, ferns and fern allies). The images are all in color and are 400 x 600, 600 x 400, or 400 x 400 pixels in size. More than 225 families are represented among the several hundred images in this category.

Denver Museum of Nature & Science (DMNS): The Paleobotany Project. The DMNS Paleobotany Project acts as a repository of images (and accepted nomenclature) of Late Cretaceous through Eocene fossil plants from the Western Interior of North America.

! Erling Dorf (project continued by the Yale Peabody Museum’s Division of Paleobotany; electronic release 1.0, Jan 11, 2006 by L.J. Hickey, L.S. Klise, and W.A. Green): The Compendium Index of North American Mesozoic and Cenozoic Type Fossil Plants (PDF files). This card catalog contains illustrations and descriptions of fossil plant species. Based on variables such as leaf shape and major venation type these cards are arranged into sets of numbered morphological categories. It presently covers fossil floras from North America, including Greenland, starting in the Triassic and extending to the Pleistocene. Over 93 references have been added in the last 20 years, and the Compendium Index has grown from 10,000 cards to approximately 20,000 cards, with 9,881 entries from 235 references dating from 1866 to 2003. Freely distributable for non-commercial purposes.
Table of contents:
README.txt---this file, containing license and general information
CI.csv, CI.xls---the data files in tab-delimited text format and Excel (.xls) format
CI.txt---an ascii file giving the database structure
CICflat_key.pdf---a flat description of the Compendium Index Categories that originally appeared in Leaf Architecture Working Group (1999)
CICthumbnails.pdf---small illustrations of the Compendium Index Categories that originally appeared in Leaf Architecture Working Group (1999)
CICdichotomous_key.pdf---a dichotomous key to the Compendium Index Categories that appears here and in Green and Hickey (in press)
age_codes.pdf---a key to the age codes used in the database
references.pdf---an alphabetical list of the publications cited in the database
CICeps.tar.gz---a gzipped tar archive with high-quality eps representing Compendium Index Cateogries 100--155. A future release will include all the images shown as thumbnails in CICthumbnails.pdf

Christopher J. Earle, University of Washington, Seattle: The Gymnosperm Database. You may enter the taxonomic tree at the highest level (order or family) and then navigate to the species. At each level, information on the taxon at hand is provided, along with bibliographic citations that will take you to more detailed information about the species.

The Royal Botanic Garden Edinburgh: Multisite Living Collections Searches. The data available in these searches are extracted from the on-line Living Collections databases at The Royal Horticultural Society (UK), World Conservation Monitoring Centre (Threatened Plants), The Sir Harold Hillier Gardens and Arboretum (UK), Holden Arboretum (USA), Arnold Arboretum (USA), Cornell Plantations (USA), Phipps Conservatory and Botanic Gardens (USA), The New York Botanical Garden (USA) and The Desert Botanical Garden (USA).

Douglas J. Eernisse, Department of Biological Science, California State University, Fullerton: About Hierarchies.

Joe Felsenstein, Department of Genome Sciences and Department of Biology, University of Washington, Seattle: Phylogeny programs available elsewhere. Links to 383 phylogeny packages (free and non-free ones) and 52 free servers.

Rob Fensome, Andrew MacRae, and Graham Williams, Project of the Geological Survey of Canada (Atlantic): Dinoflagellate Classification Database (DINOFLAJ). DINOFLAJ is a database system containing a current classification of fossil and living dinoflagellates down to generic rank, and an index of fossil dinoflagellates at generic, specific, and infraspecific ranks.

FOSSILIUM CATALOGUS II: PLANTAE. Book announcement, Table of Contents.

Andrew N Gagg & Roger Whitehead: BABEL. A bibliography and source list to works in numerous European languages for the vernacular names of European wild plants.

Mark A. Garland, Division of Plant Industry, Florida Department of Agriculture and Consumer Services, Tallahassee, Florida: Scientific Names of Plants. A pronunciation guide for scientific Latin. See also:
What Scientific Names of Plants Mean.

Die Globale Taxonomie Initiative GTI, Nationale Kontaktstelle Deutschland (part of the Convention on Biological Diversity, CBD, hosted by Staatliches Museum für Naturkunde Stuttgart). The objectives of the GTI are the provision of sufficient taxonomic capacities to fullfill the aims of the CBD, i.e. the protection and sustainable use of the components of biodiversity. Go to: Identification helps and keys for Animals, Plants and Fungi from all regions.

Chuck Griffith: A Dictionary of Botanical Epithets.

The Harvard University Herbaria: The Botanical Authors Database. The authority table of botanical authors make use of the internationally accepted standards to verify the entry of author names in the type specimen and Gray Card Index databases in the Harvard University Herbaria.

IAPT-MARY SUPRAGENERIC NAMES DATABASE: The Indices Nominum Supragenericorum Plantarum Vascularium Project is supported by the International Association for Plant Taxonomy and the Norton-Brown Herbarium of the University of Maryland. Select database to search: INDEX NOMINUM SUPRAGENERICORUM PLANTARUM VASCULARIUM.

ICAL-Botany, hosted and maintained by the Missouri Botanical Garden: The Interactive Collections Availability List. Here you will find a list of botanical collections that are either: orphaned and available for adoption by an institution, or underutilized and in need of further investigation by research students and scientists. ICAL-Botany also allows you to notify the world-wide botanical community through an automatic distribution list that you have a collection that either needs a new home or needs further study. Links worth checking out: Orphaned Collections Needs Home Now! Maintained by the Museum of Paleontology (UCMP), California at Berkeley.

Index Nominum Genericorum (ING). The ING, a collaborative project of the International Association for Plant Taxonomy (IAPT) and the Smithsonian Institution, was initiated in 1954 as a compilation of generic names published for all organisms covered by the International Code of Botanical Nomenclature. Current work on the ING is supported by the Smithsonian Institution, IAPT, and the University of Utrecht, Utrecht, The Netherlands. The content of the database was developed over a 40-year period by the efforts of more than 100 collaborators. Enter a generic name in the ING Generic Name Query Form. Search by the full spelling of the name or if you are uncertain you can use a wild card search by entering a string of letters followed by an asterisk (e.g., Asteranth*).

International Association for Plant Taxonomy (IAPT). IAPT is dedicated to organismal biodiversity the extent, recognition, organization, evolution, and naming of plants and fungi, both living and fossil.

! International Code of Botanical Nomenclature. Adopted by the Sixteenth International Botanical Congress St Louis, Missouri, July-August 1999.

! International Commission on Zoological Nomenclature: The International Code of Zoological Nomenclature (4th edition, 1999).

International Organization for Plant Information (IOPI): IOPI manages a series of cooperative international projects that aim to create databases of plant taxonomic information. IOPI Database of Plant Databases (DPD). DPD is a global list of plant databases, to tell you who is putting together what data and where.

International Organization for Plant Information (IOPI): IOPI manages a series of cooperative international projects that aim to create databases of plant taxonomic information. The Global Plant Checklist Project. A Global Plant Checklist, encompassing about 300,000 vascular plant species and over 1,000,000 names, is IOPI's first priority. Eventually, the Checklist will also include non-vascular plants (mosses and liverworts, and even lichens and algae if they have not been dealt with elsewhere). A provisional Checklist is in operation.

International Organization for Plant Information (IOPI): IOPI manages a series of cooperative international projects that aim to create databases of plant taxonomic information. The Species Plantarum Project (SPP). SPP is a long term project to record essential taxonomic information on vascular plants worldwide. It is being published in hardcopy as "Flora of the World". It includes accepted names and synonyms with places of publication and types, short descriptions of all taxa from family to infraspecific rank, keys, distributions, references to literature comments, etc.

International Plant Names Index (IPNI). IPNI is a database of the names and associated basic bibliographical details of all seed plants. Its goal is to eliminate the need for repeated reference to primary sources for basic bibliographic information about plant names.

Keith Karoly, Biology Department, Reed College, Portland, OR: Vascular Plant Diversity. An internet guide. Go to: Introduction to Plant Taxonomy.

National Center for Biotechnology Information (NCBI), U.S. National Library of Medicine, Bethesda, MD: The NCBI Taxonomy Homepage. The NCBI taxonomy database does not follow a single taxonomic treatise but rather attempts to incorporate phylogenetic and taxonomic knowledge from a variety of sources, including the published literature, web-based databases, and the advice of sequence submitters and outside taxonomy experts. See also here.

The Royal Botanic Gardens, Kew: Botanical information from Kew and beyond.
Go to: The International Plant Names Index (IPNI). IPNI is a database of the names and associated basic bibliographical details of all seed plants. See also: Vascular Plant Families and Genera. The data presented here are taken from the publication Vascular Plant Families and Genera compiled by R. K. Brummitt and published by the Royal Botanic Gardens, Kew in 1992.

The Natural History Museum London: Nature online > The science of natural history > Taxonomy and systematics What´s in a name? A history of taxonomy by Sandra Knapp.
See also: Nature online > The science of natural history > Natural history biographies.

Hannes Löser, Hermosillo, Sonora, México: PaleoTax. PaleoTax is a database management system to record taxonomic, geographic and stratigraphic data in biology and palaeontology and dedicated to taxonomists.

University of Maryland at College Park Libraries: Plants: Common and Scientific Names: A Guide to Sources. This site is a selected list of information sources for plant names. The topics range from plants in general, to specific categories such as exotic plants and trees, shrubs and vines. The areas covered include: taxonomy, classification and nomenclature of plants.

! S.C. Matthews (1973): Notes on open Nomenclature and on synonymy lists. Palaeontology, Volume 16, Part 4, 1973, Pages 713-719. Accessible through the www.palass.org website.

Ian Miller and Rose Prevec, Palaeontologia Electronica Volume 9, Issue 2 (2006): Palaeobotany in the Digital Age: Unearthing the Future of Taxonomy.

The Missouri Botanical Garden, St. Louis, Missouri: w3TROPICOS. The Missouri Botanical Garden announces live access to its TROPICOS Nomenclatural database system through the World Wide Web. Information is available for over 750,000 scientific plant names. The records frequently have links to other associated names, types, synonymy, and bibliographic references.

Jonathan Nabe, SUNY at Stony Brook: A Winner's Circle of Best Science Web Sites, Taxonomy, evolution and ecology. Taxonomy and systematics resources.

! Daniel L. Nickrent, Department of Plant Biology, Southern Illinois University, Carbondale, Illinois: Elements of Plant Systematics. Lecture notes. Topics are the principles of plant classification including history, nomenclature, specimen collection and preservation, current systematic methodologies, and a survey of major plant families. See also:
Links to Other Plant Systematics Courses on the WWWeb, Useful References for Plant Systematics and Evolution, and Elements of Plant Systematics References.

Ray Phillips, Information Technology Services, Colby College, Waterville, Maine: World Wide Flowering Plant Family Identification. Select the characters that are present in the specimen being identified and press "Submit". Database is part of "Biology 211: Flowering Plant Taxonomy", an introduction to the principles and practice of flowering plant taxonomy.

Ray Phillips, Information Technology Services, Colby College, Waterville, Maine: Biology 211: Flowering Plant Taxonomy. An introduction to the principles and practice of flowering plant taxonomy. Visit the Guide to Flowering Plant Family Recognition. This is a descriptive and photographic tour of some families in the Magnoliophyta (60 flowering plant families).

The Field, Penpol, Lostwithiel, Cornwall: Plants For A Future - Database Search, and The Species Database. A resource and information centre for edible and other useful plants. Plants for a Future is a project based in Devon and Cornwall which seeks to gather together and disseminate information on the many useful properties of plants, particularly those plants which are less common in today's society. The database contains over 7000 species.

! James L. Reveal, Norton-Brown Herbarium, University of Maryland: FindIT, Links to Web Sites of Botanical Interest, Dictionaries. Academic Press Dictionary of Science and Technology - Life Sciences - e.g. Biology, Botany, Cell Biology, Ecology, Evolution, Molecular Biology, Systematics, etc. Excellent!

James L. Reveal, Norton-Brown Herbarium, University of Maryland: Advanced Plant Taxonomy. Systems of classification for magnoliophyta, history of systematic botany, approaches to biological classification, taxonomic hierarchy, types of data. See also the World-Wide Web Resources for PBIO 450.

! Schmidt, Diane, Allison, Melody M., Clark, Kathleen A., Jacobs, Pamela F. and Porta, Maria A., Libraries Unlimited (a member of the Greenwood Publishing Group): Guide to Reference and Information Sources in Plant Biology. This directory contains the URLs and annotations for Web-accessible resources. Go to:
Systematics and Identification.>

! Judith E. Skog, International Association for Plant Taxonomy:
Report of the Committee for Fossil Plants: 4. PDF file, Taxon (2003), 52: 341-341.
Report of the Committee for Fossil Plants: 5. PDF file, Taxon (2005), 54: 175-176.
Report of the Committee for Fossil Plants: 6. PDF file, Taxon (2005), 54: 827-827.

! Society of Australian Systematic Biologists (SASB): Introductory Glossary of Cladistic Terms.

Bioinformatics Working Group, Texas A&M University: Vascular Plant Family Finder. Internet information for a given family.

TreeBASE. TreeBASE is a relational database of phylogenetic information hosted by the University at Buffalo. In previous years the database has been hosted by Harvard University Herbaria, Leiden University EEW, and the University of California, Davis. TreeBASE stores phylogenetic trees and the data matrices used to generate them from published research papers.

U.S. Department of Agriculture (USDA): PLANTS Database. The PLANTS database focuses on vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories. It includes names, checklists, automated tools, identification information, species abstracts, distributional data, crop information, plant symbols, plant growth data, plant materials information, plant links, references, and other plant information.

L. Watson Albany, Australia, and M. J. Dallwitz CSIRO Entomology, Canberra, Australia (page hosted by DELTA): The Families of Flowering Plants. Descriptions, illustrations, identification, and information retrieval. Version: 25th November 2009. The Intkey software is required.
Also worth to check out: Static information. Character list, implicit attributes, notes on the APG classification, etc.

Steven J. Wolf, Department of Biological Sciences, California State University, Stanislaus: Flowering Plants. Lecture notes about plant taxonomy and systematics, history of plant taxonomy, identification keys used to identify plants, plant nomenclature, etc. Go to: History of Plant Taxonomy.

Doug Yanega: Curious Scientific Names. Some weird and wacky scientific names in biological nomenclature.










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This index is compiled and maintained by Klaus-Peter Kelber, Würzburg,
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Last updated February 22, 2010